Download Expression Profile of Each Dataset

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Knock-Method	T(co)F	Species	T(co)F Class	T(co)F Superclass	Biosample Name	Tissue Type	Biosample Type	Data Source	Profile ID	Platform	Pubmed ID	Download
siRNA	Smad4	Mus musculus	SMAD/NF-1 DNA-binding domain factors	beta-Hairpin exposed by an alpha/beta-scaffold	bEnd3	Brain	Cell line	GEO	GSE15736	GPL1261	21397841	txt
siRNA	Sox10	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	B16F10	Melanoma	Cell line	GEO	GSE25501	GPL6238	22363655	txt
siRNA	Sox17	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	NG4	Embryo	Stem cell	GEO	GSE39770	GPL1261	23103054	txt
siRNA	Sox2	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	NG4	Embryo	Stem cell	GEO	GSE39771	GPL1261	23103054	txt
siRNA	Stat3	Mus musculus	STAT domain factors	Immunoglobulin fold	RAW264.7	Macrophage_ cells	Cell line	GEO	GSE152986	GPL17791	32730332	txt
siRNA	Twist1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	MC3T3-E1	Heart	Cell line	GEO	GSE30953	GPL1261	22242143	txt
siRNA	Wt1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	LB-22	Embryo_ kidney	Cell line	GEO	GSE66356	GPL1261	25804736	txt
siRNA	Xbp1	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Liver	Liver	Tissue	GEO	GSE40515	GPL11180	23040070	txt
siRNA	Zbed6	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	C2C12	Muscle	Cell line	GEO	GSE33430	GPL6885	24714595	txt
siRNA	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	AtT-20	Pituitary_ gland	Cell line	GEO	GSE10552	GPL1261	18922972	txt
siRNA	Cpeb1	Mus musculus	Others	Unclassified Structure	Neuro-2a	Neuron	Primary cell	GEO	GSE147604	GPL1261	35496917	txt
siRNA	Bcl3	Mus musculus	Rel homology region (RHR) factors	Immunoglobulin fold	bone marrow derived macrophage (BMDM)	Bone_marrow	Primary cell	GEO	GSE39922	GPL6885	23063365	txt
siRNA	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	peritoneal macrophages	Peritoneum	Primary cell	GEO	GSE70631	GPL7202	27240213	txt
siRNA	Stat5b	Mus musculus	STAT domain factors	Immunoglobulin fold	MIN6	Pancreas	Cell line	GEO	GSE85496	GPL6887	-	txt
siRNA	Dux	Mus musculus	Homeo domain factors	Helix-turn-helix domains	ES cells	Embryo	Cell line	GEO	GSE100938	GPL21103	29937225	txt
siRNA	Ncl	Mus musculus	Others	TcoF-DB_ TcoF	ES cells	Embryo	Cell line	GEO	GSE100938	GPL21103	29937225	txt
siRNA	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	iPSC	Embryo	Cell line	GEO	GSE104250	GPL17021	32614092	txt
siRNA	Dnmt3b	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	iPSC	Embryo	Cell line	GEO	GSE104250	GPL17021	32614092	txt
siRNA	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Embryo	Embryo	Tissue	GEO	GSE111265	GPL21626	-	txt
siRNA	Zbp1	Mus musculus	Others	TcoF-DB_ TF	bone marrow-derived mesenchymal stem_progenitor cells	Bone_marrow	Stem cell	GEO	GSE117334	GPL21493	32195010	txt
siRNA	Brca1	Mus musculus	Others	TcoF-DB_ TF	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE118677	GPL19057	32351783	txt
siRNA	Ezh2	Mus musculus	Others	TcoF-DB_ TF	Mesenchymal stem cells	Bone_marrow	In vitro differentiated cell	GEO	GSE138980	GPL13112	32022326	txt
siRNA	Usp7	Mus musculus	Others	TcoF-DB_ TcoF	ES cells	Embryo	Cell line	GEO	GSE149341	GPL17021	-	txt
siRNA	Ets2	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Trophoblast stem (TS) cells	Embryo	Stem cell	GEO	GSE62168	GPL1261	25446535	txt
siRNA	Hmg20a	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Primary hypothalamic astrocytes	Hypothalamus	Cell line	GEO	GSE161334	GPL19057	34093866	txt
siRNA	Hoxa5	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Adult mouse cardiomyocytes	Heart	Primary cell	GEO	GSE165497	GPL24247	-	txt
siRNA	Foxq1	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	NM18	Mammary_ gland	Cell line	GEO	GSE23833	GPL8321	20717954	txt
siRNA	Gata1	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Bone marrow-derived mast cells	Bone_marrow	Primary cell	GEO	GSE52254	GPL13912	24615013	txt
siRNA	Gata3	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	CD4+ T helper (Th) cells	Peripheral_ blood	Primary cell	GEO	GSE46185	GPL1261	23824597	txt
siRNA	Gata4	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	TM4	Testis	Cell line	GEO	GSE74471	GPL6887	26974005	txt
siRNA	Prmt1	Mus musculus	Arginine methyltransferase	Histone-modifying Enzymes	3T3-L1 cells	Adipose_ tissue	Cell line	GEO	GSE197065	GPL13112	35921899	txt
siRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE48206	GPL16417	24162740	txt
siRNA	Kdm5b	Mus musculus	ARID domain factors	Helix-turn-helix domains	ES cells	Embryo	Cell line	GEO	GSE63285	GPL17021	-	txt
siRNA	Mbd1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	3T3-L1 cells	Adipose_ tissue	Cell line	GEO	GSE73231	GPL1261	26590716	txt
siRNA	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	embryonic cardiomyocytes	Heart	Primary cell	GEO	GSE77514	GPL19057	27306334	txt
siRNA	Dnmt3b	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	embryonic cardiomyocytes	Heart	Primary cell	GEO	GSE77514	GPL19057	27306334	txt
siRNA	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	embryonic cardiomyocytes	Heart	Primary cell	GEO	GSE81446	GPL19057	34235895	txt
siRNA	Hnrnpk	Mus musculus	HNRNP	TcoF-DB_ TF	ES cells	Embryo	Cell line	GEO	GSE84386	GPL13112	27741228	txt
siRNA	p63	Mus musculus	p53 domain factors	Immunoglobulin fold	Primary keratinocytes	Skin	Primary cell	GEO	GSE10564	GPL8321	18441228	txt
siRNA	Pparg	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Preadipocytes	Adipose_ tissue	Tissue	GEO	GSE103474	GPL10333	-	txt
shRNA	Sox2	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE34170	GPL6885	23169531	txt
shRNA	Tcf7	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	EML	Hematopoietic	Cell line	GEO	GSE30068	GPL6887	22412390	txt
shRNA	Tet2	Mus musculus	Others	TcoF-DB_ TF	HAFTL	Macrophage_ cells	Cell line	GEO	GSE39666	GPL10333	22981865	txt
shRNA	Tet2	Mus musculus	Others	TcoF-DB_ TF	ES cells	Embryo	Cell line	GEO	GSE41721	GPL11180	23222540	txt
shRNA	Tsc22d4	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Liver	Liver	Tissue	GEO	GSE33324	GPL9746	23307490	txt
shRNA	Tsc22d4	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Abdominal fat	Adipose_ tissue	Tissue	GEO	GSE53753	GPL17791	-	txt
shRNA	Tsc22d4	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Abdominal fat	Adipose_ tissue	Tissue	GEO	GSE53754	GPL17791	-	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE26900	GPL6887	21295276	txt
shRNA	Ncoa3	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	ES cells	Embryo	Cell line	GEO	GSE40192	GPL6887	23019124	txt
shRNA	Ncoa3	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	ES cells	Embryo	Cell line	GEO	GSE40193	GPL6887	23019124	txt
shRNA	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE47501	GPL10333	23754744	txt
shRNA	Cebpa	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	lineage-negative marrow progenitors	Bone_marrow	Cell line	GEO	GSE55760	GPL6887	24752325	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE24842	GPL11078	21490601	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE24843	GPL11078	21490601	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE26830	GPL1261	21451524	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE26833	GPL1261	21451524	txt
shRNA	Bptf	Mus musculus	Bromodomain	Chromatin Remodeling Factors	4T1 cells	Mammary_ gland	Cell line	GEO	GSE71864	GPL8321	27651309	txt
shRNA	Smarca4	Mus musculus	Others	TcoF-DB_ TF	ES cells	Embryo	Cell line	GEO	GSE79652	GPL10787	27154007	txt
shRNA	Smarca4	Mus musculus	Others	TcoF-DB_ TF	ES cells	Embryo	Cell line	GEO	GSE79655	GPL10787	27154007	txt
shRNA	Dnmt3l	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE44643	GPL6887	24074865	txt
shRNA	Fubp1	Mus musculus	Others	TcoF-DB_ TF	brain neural progenitors	Brain	Tissue	GEO	GSE108537	GPL19057	29606613	txt
shRNA	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	MLL-ENL-ERtm	Muscle	Cell line	GEO	GSE116548	GPL15103	-	txt
shRNA	Crebbp	Mus musculus	Others	Co-activator/repressors	preSC	Lung	Cell line	GEO	GSE117550	GPL17021	30181244	txt
shRNA	Nsd2	Mus musculus	HMG	Other Alpha-Helix Group	NPK	Prostate	Cell line	GEO	GSE118784	GPL17021	-	txt
shRNA	Fubp1	Mus musculus	Others	TcoF-DB_ TF	BM cells	Bone_marrow	Primary cell	GEO	GSE124304	GPL13112	30635626	txt
shRNA	Atoh8	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	mPAC L20	Pancreas	Cell line	GEO	GSE43537	GPL1261	-	txt
shRNA	Kat6b	Mus musculus	C2HC zinc finger factors	Zinc-coordinating DNA-binding domains	LT-HSCs	Bone_marrow	Cell line	GEO	GSE133304	GPL19057	-	txt
shRNA	Cebpa	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Marrow progenitors	Bone_marrow	Primary cell	GEO	GSE55760	GPL6887	24752325	txt
shRNA	Cebpb	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	4T1 mammary tumor cells	Mammary_ gland	Primary cell	GEO	GSE40825	GPL15887	-	txt
shRNA	Setd1a	Mus musculus	SET	TcoF-DB_ TcoF	Retina	Eye	Tissue	GEO	GSE154498	GPL21493	33938913	txt
shRNA	Esrrb	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE34170	GPL6885	23169531	txt
shRNA	Brpf1	Mus musculus	Others	Other Cofactors	Neural progenitor cells	Nerve	Primary cell	GEO	GSE157903	GPL17021	33744924	txt
shRNA	Foxk1	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	MEFs	Embryo	Primary cell	GEO	GSE112701	GPL1261	-	txt
shRNA	Junb	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Tibialis anterior muscle	Tibialis_ anterior_ muscle	Tissue	GEO	GSE18664	GPL4134	20921137	txt
shRNA	Setdb1	Mus musculus	Others	ENCODE_ TF	NE-4C	Neuron	Cell line	GEO	GSE192373	GPL24247	35671824	txt
shRNA	Klf17	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	168FARN	Mammary_ gland	Cell line	GEO	GSE17081	GPL6238	19801974	txt
shRNA	Klf6	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	HCC	Liver	Cell line	GEO	GSE54762	GPL1261	26876204	txt
shRNA	Ezh2	Mus musculus	Others	TcoF-DB_ TF	SVZ derived neural stem cells	Brain	Stem cell	GEO	GSE63853	GPL13112	25600873	txt
shRNA	Mef2a	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	C2C12	Muscle	Cell line	GEO	GSE63798	GPL19485	25416778	txt
shRNA	Mef2b	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	C2C12	Muscle	Cell line	GEO	GSE63798	GPL19485	25416778	txt
shRNA	Mef2c	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	C2C12	Muscle	Cell line	GEO	GSE63798	GPL19485	25416778	txt
shRNA	Mef2d	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	C2C12	Muscle	Cell line	GEO	GSE63798	GPL19485	25416778	txt
shRNA	Myb	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	AML cells	Hematopoietic	Cell line	GEO	GSE30745	GPL1261	21828272	txt
shRNA	Myb	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Tracheal epithelial cell	Lung	Primary cell	GEO	GSE60365	GPL17543	25103188	txt
shRNA	Pcbp1	Mus musculus	Others	TcoF-DB_ TF	Th1	Thymus	Primary cell	GEO	GSE84699	GPL13112	29958803	txt
shRNA	Dux	Mus musculus	Homeo domain factors	Helix-turn-helix domains	ES cells	Embryo	Cell line	GEO	GSE94324	GPL17021	28459456	txt
shRNA	Setdb1	Mus musculus	Others	ENCODE_ TF	ES cells	Embryo	Cell line	GEO	GSE94444	GPL19057	29351814	txt
shRNA	Nfix	Mus musculus	SMAD/NF-1 DNA-binding domain factors	beta-Hairpin exposed by an alpha/beta-scaffold	LSK	Muscle	Cell line	GEO	GSE45492	GPL11180	24041575	txt
shRNA	Prdm2	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	C2C12	Muscle	Cell line	GEO	GSE58676	GPL1261	26040698 26697392	txt
shRNA	Rest	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE28141	GPL6885	21632747	txt
shRNA	Rest	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	NSP	Brain	Cell line	GEO	GSE38538	GPL1261	22791895	txt
shRNA	Sall4	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE14219	GPL1261	19350679	txt
RNAi	Npas4	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Hippocampal Neurons	Brain	Primary cell	GEO	GSE11258	GPL1261	18815592	txt
knockout	Smad4	Mus musculus	SMAD/NF-1 DNA-binding domain factors	beta-Hairpin exposed by an alpha/beta-scaffold	Aortic arteries	Aorta	Tissue	GEO	GSE67182	GPL1261	-	txt
knockout	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Embryoid body	Embryo	Tissue	GEO	GSE53106	GPL1261	24401905	txt
knockout	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Teratoma	Embryo	Tissue	GEO	GSE53106	GPL1261	24401905	txt
knockout	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic stem cells (ESCs)	Embryo	Stem cell	GEO	GSE53107	GPL1261	24401905	txt
knockout	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic stem cells (ESCs)	Embryo	Stem cell	GEO	GSE53108	GPL11180	24401905	txt
knockout	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Small intestinal organoid	Intestine	Tissue	GEO	GSE65005	GPL6887	27054090	txt
knockout	Sohlh1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Ovary	Ovary	Tissue	GEO	GSE24816	GPL6887	-	txt
knockout	Sohlh2	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Ovary	Ovary	Tissue	GEO	GSE24816	GPL6887	-	txt
knockout	Sox11	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Retina	Eye	Tissue	GEO	GSE43089	GPL1261	-	txt
knockout	Sox11	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Cortex	Brain	Tissue	GEO	GSE44308	GPL1261	23483698	txt
knockout	Sox21	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Incisor	Tooth	Tissue	GEO	GSE99359	GPL13912	32674056	txt
knockout	Sox6	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Cardiac ventricle	Heart	Tissue	GEO	GSE60958	GPL6887	27832192	txt
knockout	Sox9	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	Trachea	Lung	Tissue	GEO	GSE97788	GPL6885	27941074	txt
knockout	Sp3	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Heart	Heart	Tissue	GEO	GSE9124	GPL1261	17923686	txt
knockout	Spdef	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Colon	Colon	Tissue	GEO	GSE20299	GPL8759	20801882	txt
knockout	Spdef	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Stomach	Stomach	Tissue	GEO	GSE20299	GPL8759	20801882	txt
knockout	Srf	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	Aorta	Aorta	Tissue	GEO	GSE34545	GPL1261	-	txt
knockout	Srf	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	Denate gyrus of hippocampus	Brain	Tissue	GEO	GSE60772	GPL17543	25636686	txt
knockout	Stat3	Mus musculus	STAT domain factors	Immunoglobulin fold	Lung typeII cells	Lung	Cell line	GEO	GSE6846	GPL1261	18070348	txt
knockout	Stat4	Mus musculus	STAT domain factors	Immunoglobulin fold	Lamina propria lymphocytes	Lymph	Primary cell	GEO	GSE124078	GPL11202	30770344	txt
knockout	Stat6	Mus musculus	STAT domain factors	Immunoglobulin fold	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE25088	GPL1261	21093321 24314139	txt
knockout	Tbx1	Mus musculus	T-Box factors	Immunoglobulin fold	Otic vesicles	Ear	Tissue	GEO	GSE34064	GPL1261	-	txt
knockout	Tbx1	Mus musculus	T-Box factors	Immunoglobulin fold	Otic vesicles	Ear	Tissue	GEO	GSE34065	GPL1261	-	txt
knockout	Tet2	Mus musculus	Others	TcoF-DB_ TF	Kidney	Kidney	Tissue	GEO	GSE116911	GPL1261	-	txt
knockout	Thap1	Mus musculus	C2CH THAP-type zinc finger factors	Zinc-coordinating DNA-binding domains	Cerebellum	Brain	Tissue	GEO	GSE97372	GPL6885	28697333	txt
knockout	Thap1	Mus musculus	C2CH THAP-type zinc finger factors	Zinc-coordinating DNA-binding domains	Cortex	Brain	Tissue	GEO	GSE97372	GPL6885	28697333	txt
knockout	Thap1	Mus musculus	C2CH THAP-type zinc finger factors	Zinc-coordinating DNA-binding domains	Striatum	Brain	Tissue	GEO	GSE97372	GPL6885	28697333	txt
knockout	Thap11	Mus musculus	C2CH THAP-type zinc finger factors	Zinc-coordinating DNA-binding domains	Heart	Heart	Tissue	GEO	GSE103959	GPL6887	29117561	txt
knockout	Thap11	Mus musculus	C2CH THAP-type zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE120008	GPL1261	-	txt
knockout	Vax2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Whole eye	Eye	Tissue	GEO	GSE19626	GPL8321	21148184	txt
knockout	Vdr	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE2421	GPL339	16118315	txt
knockout	Vdr	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Skin	Skin	Tissue	GEO	GSE68723	GPL6885	-	txt
knockout	Vdr	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Skin	Skin	Tissue	GEO	GSE68727	GPL6885	-	txt
knockout	Vdr	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Skin	Skin	Tissue	GEO	GSE68729	GPL6885	-	txt
knockout	Wt1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Kidney	Kidney	Tissue	GEO	GSE58073	GPL2995	25031030	txt
knockout	Wt1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Oviduct	Oviduct	Tissue	GEO	GSE75924	GPL1261	28334862	txt
knockout	Yy1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Skeletal muscle	Muscle	Tissue	GEO	GSE39009	GPL8321	22711985	txt
knockout	Yy1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Jejunum crypt epithelium	Intestine	Tissue	GEO	GSE53496	GPL1261	24821761	txt
knockout	Yy1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Subcutaneous white adipose tissue	White_ adipose_ tissue	Tissue	GEO	GSE68382	GPL8321	26503783	txt
knockout	Yy1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Visceral white adipose tissue	White_ adipose_ tissue	Tissue	GEO	GSE70562	GPL8321	26503783	txt
knockout	Rag1	Mus musculus	Others	Unclassified Structure	Liver	Liver	Tissue	GEO	GSE205510	GPL32323	35833123	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE3534	GPL339	17311920	txt
knockout	Bptf	Mus musculus	Bromodomain	Chromatin Remodeling Factors	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE48123	GPL6887	25348714	txt
knockout	Prdm11	Mus musculus	Others	Unclassified Structure	Lung	Lung	Tissue	GEO	GSE49705	GPL6885	-	txt
knockout	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Bone marrow-derived osteoclasts	Bone_marrow	In vitro differentiated cell	GEO	GSE59387	GPL13912	-	txt
knockout	Brca1	Mus musculus	Others	TcoF-DB_ TF	mouse P7 brain	Brain	Tissue	GEO	GSE6310	GPL1261	21901007	txt
knockout	Brca1	Mus musculus	Others	TcoF-DB_ TF	mouse P7 cortex	Brain	Tissue	GEO	GSE6310	GPL340	21901007	txt
knockout	Brca1	Mus musculus	Others	TcoF-DB_ TF	mouse P7 cortex	Brain	Tissue	GEO	GSE6310	GPL8321	21901007	txt
knockout	Brca1	Mus musculus	Others	TcoF-DB_ TF	CD24+ primary mammary epithelial cells	Mammary_ gland	Cell line	GEO	GSE67440	GPL6885	26941120	txt
knockout	Dnmt3b	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Cardiac ventricle	Heart	Tissue	GEO	GSE68518	GPL6887	26098432	txt
knockout	Bcl11b	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	main olfactory epithelium (MOE)	Main_olfactory_ epithelium	Tissue	GEO	GSE90798	GPL1261	31531404	txt
knockout	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Satellite cells	Skeletal_ muscle	Stem cell	GEO	GSE97340	GPL10333	29146735	txt
knockout	Gata4	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Primary liver sinusoidal endothelial cells	Liver	Primary cell	GEO	GSE141001	GPL24557	32916216	txt
knockout	Kdm5b	Mus musculus	ARID domain factors	Helix-turn-helix domains	left ventricles	Heart	Tissue	GEO	GSE197223	GPL7202	36481938	txt
knockout	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Hematopoietic stem cell (HSC)	Haematopoietic_ and_lymphoid_ tissue	Stem cell	GEO	GSE27322	GPL1261	22138693	txt
knockout	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE30748	GPL4134	21816367	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	CD8+ T cells	Lymph	Primary cell	GEO	GSE40741	GPL11180	-	txt
knockout	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	brain cortex	Cortex	Tissue	GEO	GSE48789	GPL10333	24050401	txt
knockout	Tet1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Hippocampus	Hippocampus	Tissue	GEO	GSE48789	GPL10333	24050401	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	CD45.2+LSK cells	Bone_marrow	Primary cell	GEO	GSE50537	GPL10787	24953053	txt
knockout	Crebbp	Mus musculus	Others	Co-activator/repressors	Germinal center B cells	Spleen	Primary cell	GEO	GSE88799	GPL1261	28069569	txt
knockout	Rag1	Mus musculus	Others	Unclassified Structure	Mice fractured callus	Bone	Tissue	GEO	GSE99128	GPL6885	28596766	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Liver	Liver	Tissue	GEO	GSE67734	GPL6885	-	txt
knockout	Ezh1	Mus musculus	Others	Other Cofactors	LSK	Muscle	Cell line	GEO	GSE36288	GPL10787	23122289	txt
knockout	Siah2	Mus musculus	Others	Other Cofactors	Primary isolated cells	Heart	Primary cell	GEO	GSE154667	GPL21810	-	txt
knockout	Mapk9	Mus musculus	Others	TcoF-DB_ TcoF	Mouse Hip Cartilage	Hip	Tissue	GEO	GSE155892	GPL6887	33392255;36182100	txt
knockout	Mapk9	Mus musculus	Others	TcoF-DB_ TcoF	Mouse total knee	Knee	Tissue	GEO	GSE155896	GPL6887	-	txt
knockout	Hipk2	Mus musculus	HIPK	Other Cofactors	cardiac tissue	Heart	Tissue	GEO	GSE169429	GPL21163	36182775	txt
knockout	Lin28a	Mus musculus	Others	Beta-Scaffold Factors	Heart	Heart	Tissue	GEO	GSE106897	GPL17021	30636447	txt
knockout	Twist1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	stromal cells	Bone_marrow	Cell line	GEO	GSE107814	GPL21103	30026340	txt
knockout	Kat6a	Mus musculus	C2HC zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE108242	GPL19057	30069049	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	calvaria	Calvaria	Tissue	GEO	GSE111245	GPL13112	-	txt
knockout	Kmt2d	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	iBiP melanoma mouse model tumor cell	Skin	Cell line	GEO	GSE116852	GPL13112	33086062	txt
knockout	Mecp2	Mus musculus	Others	TcoF-DB_ TF	brown adipose tissue	Adipose_ tissue	Tissue	GEO	GSE117517	GPL21273	-	txt
knockout	Mecp2	Mus musculus	Others	TcoF-DB_ TF	inguinal adipose tissue	Adipose_ tissue	Tissue	GEO	GSE117517	GPL21273	-	txt
knockout	Eed	Mus musculus	Others	TcoF-DB_ TcoF	Forebrain	Brain	Tissue	GEO	GSE123331	GPL13112	35048973	txt
knockout	Eed	Mus musculus	Others	TcoF-DB_ TcoF	hindbrain	Brain	Tissue	GEO	GSE123331	GPL13112	35048973	txt
knockout	Eed	Mus musculus	Others	TcoF-DB_ TcoF	midbrain	Brain	Tissue	GEO	GSE123331	GPL13112	35048973	txt
knockout	Adnp	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Whole embryonic body	Embryo	Tissue	GEO	GSE4068	GPL339	30106381	txt
knockout	Eed	Mus musculus	Others	TcoF-DB_ TcoF	spinal cord	Spinal_ cord	Tissue	GEO	GSE123331	GPL13112	35048973	txt
knockout	Ahr	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Liver	Liver	Tissue	GEO	GSE10082	GPL1261	16214954	txt
knockout	Ahr	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Lung	Lung	Tissue	GEO	GSE48130	GPL4134	25119038	txt
knockout	Bcl3	Mus musculus	Rel homology region (RHR) factors	Immunoglobulin fold	Osteoblast	Bone	Primary cell	GEO	GSE125153	GPL21103	-	txt
knockout	Arid1a	Mus musculus	ARID domain factors	Helix-turn-helix domains	Liver	Liver	Tissue	GEO	GSE58964	GPL7202	-	txt
knockout	Arhgap35	Mus musculus	Others	TcoF-DB_ TF	Ventral spinal cord	Ventral_ spinal_ cord	Tissue	GEO	GSE126534	GPL17021	30902550	txt
knockout	Arid1a	Mus musculus	ARID domain factors	Helix-turn-helix domains	Ovary	Ovary	Tissue	GEO	GSE67695	GPL1261	26279473	txt
knockout	Sirt6	Mus musculus	Sirtuin	Chromatin Remodeling Factors	Liver	Liver	Tissue	GEO	GSE129370	GPL23479	-	txt
knockout	Atf3	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Breast tumor-associated macrophage	Mammary_ gland	Primary cell	GEO	GSE36904	GPL7202	23921126	txt
knockout	Ctnnb1	Mus musculus	Casein	Co-activator/repressors	MGE cells	Embryo	Cell line	GEO	GSE130320	GPL17021	34460072	txt
knockout	Nsd2	Mus musculus	HMG	Other Alpha-Helix Group	Bone marrow immature B cells	Bone_marrow	Primary cell	GEO	GSE130550	GPL17021	31636135	txt
knockout	Atf4	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Embryonic neurons	Brain	Primary cell	GEO	GSE10470	GPL6100	18458112	txt
knockout	Nr4a1	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	PyVT mouse mammary tumor cells	Mammary_ gland	Cell line	GEO	GSE131895	GPL24247	33087562	txt
knockout	Atf4	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Quadriceps femoris muscles	Muscle	Cell line	GEO	GSE72658	GPL6885	26338703	txt
knockout	Dux	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Embryo	Embryo	Tissue	GEO	GSE132045	GPL24247	31591446	txt
knockout	Atoh1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Intestinal epithelial Lgr5(hi) stem cells	Gastrointestinal_ tissue	Stem cell	GEO	GSE41541	GPL8321	23428873	txt
knockout	Bcl11a	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Bone marrow erythoid progenitors	Bone_marrow	Primary cell	GEO	GSE28333	GPL1261	21998251	txt
knockout	Dux	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Embryo	Embryo	Tissue	GEO	GSE134832	GPL24247	31591446	txt
knockout	Bcl6	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE16527	GPL1261	-	txt
knockout	Lin28b	Mus musculus	CSD	Beta-Scaffold Factors	Bone marrow immature B cells	Bone_marrow	Primary cell	GEO	GSE135603	GPL19057	31562190	txt
knockout	Bcl6	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Myeloid cells	Bone_marrow	Primary cell	GEO	GSE24813	GPL1261	21911423	txt
knockout	Bhlha9	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Whole limb bud	Limb	Tissue	GEO	GSE81223	GPL1261	28324176	txt
knockout	Cbx2	Mus musculus	Others	Chromatin Remodeling Factors	Embryonic gonads	Gonads	Tissue	GEO	GSE29485	GPL1261	22186409	txt
knockout	Usp7	Mus musculus	Others	TcoF-DB_ TcoF	ES cells	Embryo	Cell line	GEO	GSE141788	GPL21273	32894293	txt
knockout	Cebpb	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Mammary epithlial cells (MECs)	Mammary_ gland	Cell line	GEO	GSE16380	GPL1261	20054865	txt
knockout	Pcgf6	Mus musculus	PCGF	TcoF-DB_ TF	Brain	Brain	Tissue	GEO	GSE143206	GPL27973	32482889	txt
knockout	Cebpb	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE23821	GPL1261	21072215	txt
knockout	Pcgf6	Mus musculus	PCGF	TcoF-DB_ TF	Liver	Liver	Tissue	GEO	GSE143206	GPL27973	32482889	txt
knockout	Pcgf6	Mus musculus	PCGF	TcoF-DB_ TF	Testis	Testis	Tissue	GEO	GSE143206	GPL27973	32482889	txt
knockout	Cebpe	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE23821	GPL1261	21072215	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	mature Pvergic cortical interneurons	Cortex	Tissue	GEO	GSE145025	GPL17021	32147726	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Testes	Testis	Tissue	GEO	GSE18396	GPL1261	20007774	txt
knockout	Zmat3	Mus musculus	Others	TcoF-DB_ TF	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE145430	GPL13112	-	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Juvenile testes	Testis	Tissue	GEO	GSE22500	GPL10572	20616082	txt
knockout	Setd2	Mus musculus	SET	TcoF-DB_ TcoF	primary renal tubular epithelial (RTE) cells	Kidney	Primary cell	GEO	GSE146541	GPL17021	35115713	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Juvenile testes	Testis	Tissue	GEO	GSE22507	GPL10572	20616082	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Juvenile testes	Testis	Tissue	GEO	GSE22508	GPL10572	20616082	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Juvenile testes	Testis	Tissue	GEO	GSE22510	GPL10572	20616082	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Testes	Testis	Tissue	GEO	GSE41895	GPL1261	-	txt
knockout	Med19	Mus musculus	Mediator complex	Co-activator/repressors	Gonadal white adipose tissue	White_ adipose_ tissue	Tissue	GEO	GSE150250	GPL13112	33027649	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Ovary	Ovary	Tissue	GEO	GSE41896	GPL1261	-	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Ovary	Ovary	Tissue	GEO	GSE41897	GPL1261	-	txt
knockout	Dmrt1	Mus musculus	DM-type intertwined zinc finger factors	Zinc-coordinating DNA-binding domains	Testes	Testis	Tissue	GEO	GSE41897	GPL1261	-	txt
knockout	Irf8	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	mice brain	Brain	Tissue	GEO	GSE154002	GPL24247	34379515	txt
knockout	E2f4	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	Forebrain	Brain	Tissue	GEO	GSE10401	GPL339	-	txt
knockout	E2f4	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	Forebrain	Brain	Tissue	GEO	GSE10401	GPL340	-	txt
knockout	Mkl1	Mus musculus	Others	TcoF-DB_ TcoF	Bone marrow differentiated macrophages	Bone_marrow	Cell line	GEO	GSE155298	GPL21626	-	txt
knockout	Elf5	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Mammary gland	Mammary_ gland	Tissue	GEO	GSE32103	GPL1261	23086238	txt
knockout	Tfap2a	Mus musculus	Basic helix-span-helix factors (bHSH)	Basic domains	Brain	Brain	Tissue	GEO	GSE155629	GPL21103	32769099	txt
knockout	En2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Cerebellum	Brain	Tissue	GEO	GSE51612	GPL7202	24355397	txt
knockout	En2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Hippocampus	Hippocampus	Tissue	GEO	GSE51612	GPL7202	24355397	txt
knockout	Sirt3	Mus musculus	Sirtuin	Chromatin Remodeling Factors	pancreatic beta cell	Pancreatic_ islets	Primary cell	GEO	GSE156345	GPL19057	-	txt
knockout	Phf8	Mus musculus	PHF	Chromatin Remodeling Factors	Prostate	prostate	Tissue	GEO	GSE157621	GPL21273	33009820	txt
knockout	Foxa2	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	Whole lung	Lung	Tissue	GEO	GSE19204	GPL1261	20483781	txt
knockout	Arid2	Mus musculus	ARID domain factors	Helix-turn-helix domains	LSK	Muscle	Cell line	GEO	GSE164384	GPL19057	-	txt
knockout	Foxo1	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	Ventromedial hypothalamus	Brain	Tissue	GEO	GSE36948	GPL6887	-	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Keratinocytes	Skin	Primary cell	GEO	GSE166356	GPL17021	34586646	txt
knockout	Foxp1	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	Lens	Eye	Tissue	GEO	GSE93693	GPL10787	28384713	txt
knockout	Jmjd6	Mus musculus	Others	TcoF-DB_ TcoF	Lin-Sca1+Kit+ (LSK) haematopoietic stem and progenitor cells	Bone_marrow	Cell line	GEO	GSE168283	GPL19057	-	txt
knockout	Gata2	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	renal collecting duct cells	Kidney	Tissue	GEO	GSE52448	GPL4134	24636993	txt
knockout	Esr1	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	Liver	Liver	Tissue	GEO	GSE174535	GPL24247	34215813	txt
knockout	Cited2	Mus musculus	Others	TcoF-DB_ TcoF	Hematopoietic stem cell (HSC)	Haematopoietic_ and_lymphoid_ tissue	Stem cell	GEO	GSE175372	GPL19057	34715054	txt
knockout	Gata4	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Jejunum	Intestine	Tissue	GEO	GSE11194	GPL1261	18812176	txt
knockout	Gata5	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Left lung	Lung	Tissue	GEO	GSE47425	GPL1261	24199649	txt
knockout	Suz12	Mus musculus	Others	TcoF-DB_ TcoF	Alveolar macrophage	Lung	Primary cell	GEO	GSE176111	GPL19057	34533976	txt
knockout	Gfi1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	RAW264.7	Macrophage_ cells	Cell line	GEO	GSE152868	GPL1261	-	txt
knockout	Suz12	Mus musculus	Others	TcoF-DB_ TcoF	Alveolar macrophage	Lung	Primary cell	GEO	GSE176115	GPL19057	34533976	txt
knockout	Gfi1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	T-cells	Cord_Blood	Primary cell	GEO	GSE4940	GPL339	18034420	txt
knockout	Irf7	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	c-kit+ leukemic cells	Bone_marrow	Primary cell	GEO	GSE178560	GPL24247	35256780	txt
knockout	Gfi1b	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Ter119 positive erythroid cells	Bone_marrow	Primary cell	GEO	GSE54205	GPL1261	24800817	txt
knockout	Actl6a	Mus musculus	Actin	Chromatin Remodeling Factors	sciatic nerve	Nerve	Tissue	GEO	GSE179340	GPL21103	35434551	txt
knockout	Grhl2	Mus musculus	Grainyhead domain factors	Immunoglobulin fold	V6.5	Embryo	Cell line	GEO	GSE93146	GPL6885	30017589	txt
knockout	Ahr	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Liver	Liver	Tissue	GEO	GSE179398	GPL24247	36241614	txt
knockout	Hnf1a	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Jejunum	Intestine	Tissue	GEO	GSE23040	GPL1261	20808783	txt
knockout	Satb2	Mus musculus	CUT	Helix-turn-helix	Intestine epithelium	Colon	Primary cell	GEO	GSE180013	GPL24247	34582804	txt
knockout	Hoxc13	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Skin	Skin	Tissue	GEO	GSE23759	GPL9746	-	txt
knockout	Arid1b	Mus musculus	ARID domain factors	Helix-turn-helix domains	bone marrow leukemia cells	Bone_marrow	Cell line	GEO	GSE188291	GPL19057	35022500	txt
knockout	Hsf4	Mus musculus	Heat shock factors	Helix-turn-helix domains	Lens	Eye	Tissue	GEO	GSE12415	GPL1261	-	txt
knockout	Arid2	Mus musculus	ARID domain factors	Helix-turn-helix domains	bone marrow leukemia cells	Bone_marrow	Cell line	GEO	GSE188291	GPL19057	35022500	txt
knockout	Id2	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Distal half of midgut	Small_ intestine	Tissue	GEO	GSE43014	GPL2995	29463648	txt
knockout	Kat7	Mus musculus	C2HC zinc finger factors	Zinc-coordinating DNA-binding domains	Thymic epithelial cells	Thymic_ lobes	Cell line	GEO	GSE188869	GPL19057	35061506	txt
knockout	Irf6	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Skin	Skin	Tissue	GEO	GSE5800	GPL1261	17041601	txt
knockout	Kat7	Mus musculus	C2HC zinc finger factors	Zinc-coordinating DNA-binding domains	Thymic epithelial cells	Thymic_ lobes	Cell line	GEO	GSE188870	GPL19057	35061506	txt
knockout	Irf8	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	Splenic CD11b+Gr-1 cells	Lymph	Primary cell	GEO	GSE39228	GPL6887	24091328	txt
knockout	Bud31	Mus musculus	Others	TcoF-DB_ TcoF	Spermatogonial stem cells	Testis	Cell line	GEO	GSE189714	GPL24247	36114296	txt
knockout	Jarid2	Mus musculus	ARID domain factors	Helix-turn-helix domains	Embryonic pancreas	Pancreas	Tissue	GEO	GSE77238	GPL1261	28912479	txt
knockout	Gata2	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Pituitary gland	Brain	Tissue	GEO	GSE189915	GPL24247	35643321	txt
knockout	Padi2	Mus musculus	Other_CRF	Chromatin Remodeling Factors	Testis	Testis	Tissue	GEO	GSE194034	GPL21273	36224627	txt
knockout	Klf6	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Liver	Liver	Tissue	GEO	GSE85381	GPL11180	-	txt
knockout	Lhx8	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Oocytes	Gonads	Primary cell	GEO	GSE109473	GPL6887	29329412	txt
knockout	Lhx8	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Ovary	Ovary	Tissue	GEO	GSE7774	GPL1261	18509161	txt
knockout	Dnmt3l	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Spermatogonial progenitor cells	Testis	Cell line	GEO	GSE54411	GPL16173	24850856	txt
knockout	Lmx1b	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Proximal limb	Limb	Tissue	GEO	GSE10516	GPL1261	18351676	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	Cortex	Brain	Tissue	GEO	GSE58261	GPL17021	25080494	txt
knockout	Lmx1b	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Kidney	Kidney	Tissue	GEO	GSE12008	GPL4134	18996370	txt
knockout	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	Cortex	Brain	Tissue	GEO	GSE58261	GPL17021	25080494	txt
knockout	Mafg	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Whole embryo	Embryo	Tissue	GEO	GSE29558	GPL4134	22158967	txt
knockout	Mbd2	Mus musculus	Others	TcoF-DB_ TF	CD4+CD8+ thymocytes	Thymus	Primary cell	GEO	GSE105763	GPL1261	29330145	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	Retina	Eye	Tissue	GEO	GSE65082	GPL13112	25989023	txt
knockout	Mbd2	Mus musculus	Others	TcoF-DB_ TF	GFP+ BM leukemia cells	Lymph	Primary cell	GEO	GSE105763	GPL1261	29330145	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	Retina	Eye	Tissue	GEO	GSE71463	GPL17021	27377164	txt
knockout	Atrx	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE73881	GPL19057	-	txt
knockout	Dnmt3a	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	peritoneal macrophages	Peritoneum	Primary cell	GEO	GSE74750	GPL17021	27240213	txt
knockout	Meis1	Mus musculus	Homeo domain factors	Helix-turn-helix domains	KSL hematopoietic cells	Hematopoietic	Stem cell	GEO	GSE38336	GPL4134	24498346	txt
knockout	Gtf2ird1	Mus musculus	GTF2I	Other Alpha-Helix Group	Lip	Lip	Tissue	GEO	GSE81082	GPL13112	-	txt
knockout	Meis1	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Immortalized myeloid cell	Bone_marrow	Primary cell	GEO	GSE50645	GPL11180	27018596	txt
knockout	Mkx	Mus musculus	Homeo domain factors	Helix-turn-helix domains	PDL	Tooth	Tissue	GEO	GSE92331	GPL21810	27993989	txt
knockout	Ezh2	Mus musculus	Others	TcoF-DB_ TF	small intestinal crypts	Small_ intestinal_ crypts	Tissue	GEO	GSE81576	GPL17021	27342214	txt
knockout	Nelfb	Mus musculus	Others	General Cofactors	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE24114	GPL6885	21865163	txt
knockout	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	kidney Cap Mesenchyme	Kidney	Cell line	GEO	GSE94089	GPL13112	34944697	txt
knockout	Neurod1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Pineal gland	Eye	Tissue	GEO	GSE35396	GPL1261	22784109	txt
knockout	Neurod1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Retina	Eye	Tissue	GEO	GSE35396	GPL1261	22784109	txt
knockout	Neurod1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Pineal gland	Eye	Tissue	GEO	GSE6030	GPL1261	17630985	txt
knockout	Nfil3	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Prepro NK cells	Bone_marrow	Primary cell	GEO	GSE45955	GPL11180	-	txt
knockout	Nhlh2	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	Retina	Eye	Tissue	GEO	GSE16756	GPL8321	-	txt
knockout	Nr2f2	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	E14.5 Ovary	Ovary	Tissue	GEO	GSE100015	GPL1261	28818950	txt
knockout	Nr2f2	Mus musculus	Nuclear receptors with C4 zinc fingers	Zinc-coordinating DNA-binding domains	E16.5 Ovary	Ovary	Tissue	GEO	GSE100015	GPL1261	28818950	txt
knockout	Otx2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Retina	Eye	Tissue	GEO	GSE21900	GPL1261	21602925	txt
knockout	Otx2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Ganglionic eminences and septum	Brain	Tissue	GEO	GSE69547	GPL7202	26166575	txt
knockout	Pax5	Mus musculus	Paired box factors	Helix-turn-helix domains	B220+ cells	Bone_marrow	Primary cell	GEO	GSE39554	GPL1261	23019372	txt
knockout	Pax6	Mus musculus	Paired box factors	Helix-turn-helix domains	Surface ectoderm	Embryo	Tissue	GEO	GSE49228	GPL6887	21540023	txt
knockout	Pbx1	Mus musculus	Homeo domain factors	Helix-turn-helix domains	BM cells	Bone_marrow	Primary cell	GEO	GSE30028	GPL1261	23660001	txt
knockout	Pitx2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Cornea	Eye	Tissue	GEO	GSE76047	GPL10787	26968737	txt
knockout	Plagl2	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Small intestine	Intestine	Tissue	GEO	GSE9123	GPL1261	17983586	txt
knockout	Prdm1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Mid-intestine	Intestine	Tissue	GEO	GSE30556	GPL6885	21878906	txt
knockout	Prdm14	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE45507	GPL6887	23670199	txt
knockout	Prox1	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Liver	Liver	Tissue	GEO	GSE36583	GPL1261	24449835	txt
knockout	Rest	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Brain	Brain	Tissue	GEO	GSE68368	GPL6885	26745185	txt
knockout	Rest	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Brain	Brain	Tissue	GEO	GSE68459	GPL1261	26745185	txt
knockout	Runx1	Mus musculus	Runt domain factors	Immunoglobulin fold	Embryo	Embryo	Tissue	GEO	GSE2592	GPL1261	18671852	txt
knockout	Runx1	Mus musculus	Runt domain factors	Immunoglobulin fold	KSL cells	Bone_marrow	Primary cell	GEO	GSE40155	GPL8321	22919028	txt
knockout	Runx1	Mus musculus	Runt domain factors	Immunoglobulin fold	ProB cells	Lymph	Cell line	GEO	GSE45424	GPL7202	23704093	txt
knockout	Runx1	Mus musculus	Runt domain factors	Immunoglobulin fold	Luminal epithelial cells	Mammary_ gland	Primary cell	GEO	GSE47375	GPL1261	25415051	txt
knockout	Runx2	Mus musculus	Runt domain factors	Immunoglobulin fold	Embryonic humeri	Humeri	Tissue	GEO	GSE4911	GPL81	16829211	txt
knockout	Runx2	Mus musculus	Runt domain factors	Immunoglobulin fold	Embryonic humeri	Humeri	Tissue	GEO	GSE4911	GPL82	16829211	txt
knockout	Runx2	Mus musculus	Runt domain factors	Immunoglobulin fold	Embryonic humeri	Humeri	Tissue	GEO	GSE4911	GPL83	16829211	txt
knockout	Sall1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Kidney	Kidney	Tissue	GEO	GSE45841	GPL10787	24744442	txt
knockout	Sall1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Kidney	Kidney	Tissue	GEO	GSE45844	GPL7202	24744442	txt
knockout	Shox2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Right atria	Heart	Tissue	GEO	GSE39924	GPL13730	23455426	txt
knockout	Shox2	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Embryonic forelimb	Muscle	Tissue	GEO	GSE51523	GPL17791	24347445	txt
knockout	Smad1	Mus musculus	SMAD/NF-1 DNA-binding domain factors	beta-Hairpin exposed by an alpha/beta-scaffold	Lung left lobe	Lung	Tissue	GEO	GSE26502	GPL1261	21270055	txt
knockdown	Tet2	Mus musculus	Others	TcoF-DB_ TF	GMPs	Muscle	Cell line	GEO	GSE42666	GPL13912	24218139	txt
knockdown	Tet2	Mus musculus	Others	TcoF-DB_ TF	LSK	Muscle	Cell line	GEO	GSE42666	GPL13912	24218139	txt
knockdown	Pogz	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	fetal liver	Liver	Tissue	GEO	GSE113503	GPL1261	29898395	txt
knockdown	Dnmt1	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	intestinal tumor organoid	Gastrointestinal_ tissue	Tissue	GEO	GSE72768	GPL5642	27143627	txt
knockdown	Ezh2	Mus musculus	Others	TcoF-DB_ TF	Brain	Brain	Tissue	GEO	GSE50951	GPL6887	27538496	txt
knockdown	Bcl11b	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Embryonic fibroblasts	Embryo	Primary cell	GEO	GSE83980	GPL1261	27586877	txt
knockdown	Sfpq	Mus musculus	NonO domain factors	Yet undefined DNA-binding domains	P19 cells	Embryo	Cell line	GEO	GSE89023	GPL13912	29084942	txt
knockdown	Sfpq	Mus musculus	NonO domain factors	Yet undefined DNA-binding domains	P19 cells	Embryo	Cell line	GEO	GSE89033	GPL13912	29084942	txt
knockdown	Atf3	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Ly6G+ neutrophils	Bone_marrow	Primary cell	GEO	GSE53973	GPL13912	24470589	txt
knockdown	Batf2	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Bone marrow-derived macrophages	Bone_marrow	Primary cell	GEO	GSE59210	GPL6887	25957166	txt
knockdown	Cbfb	Mus musculus	Others	beta-Scaffold Factors	Peripheral CD4+CD25hi cells	Peripheral_ blood	Primary cell	GEO	GSE18148	GPL1261	19800266	txt
knockdown	Erg	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	HSPCs	Bone_marrow	Primary cell	GEO	GSE48600	GPL1261	28436588	txt
knockdown	Tbx20	Mus musculus	T-Box factors	Immunoglobulin fold	primary cardiac fibroblasts	Heart	Primary cell	GEO	GSE175763	GPL19057	35293863	txt
knockdown	Snai1	Mus musculus	C2H2 zinc finger factors	Zinc-coordinating DNA-binding domains	Heart	Heart	Tissue	GEO	GSE217528	GPL21273	-	txt
knockdown	Nrf1	Mus musculus	Basic leucine zipper factors (bZIP)	Basic domains	Liver	Liver	Tissue	GEO	GSE35124	GPL4134	22586274	txt
CRISPR	Kdm2a	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE117148	GPL23479	31172793	txt
CRISPR	Mef2d	Mus musculus	MADS box factors	alpha-Helices exposed by beta-structures	Cardiac ventricle	Heart	Tissue	GEO	GSE132992	GPL21103	-	txt
CRISPR	Myc	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	muscle stem cells	Skeletal_ muscle	Stem cell	GEO	GSE133956	GPL18480	34534448	txt
CRISPR	Myod1	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	myoblast	Skeletal_ muscle	Primary cell	GEO	GSE137507	GPL24247	33468253	txt
CRISPR	Gsk3b	Mus musculus	Others	TcoF-DB_ TcoF	mPFC D2 neurons	Neuron	Tissue	GEO	GSE139564	GPL19057	32584144	txt
CRISPR	Ssrp1	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE141788	GPL21273	32894293	txt
CRISPR	Pdx1	Mus musculus	Homeo domain factors	Helix-turn-helix domains	Liver	Liver	Tissue	GEO	GSE146847	GPL21103	34341582	txt
CRISPR	Fli1	Mus musculus	Tryptophan cluster factors	Helix-turn-helix domains	CD8 T cells	Lymph	Primary cell	GEO	GSE149838	GPL21626	-	txt
CRISPR	Kmt2d	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	MA1L	Liver	Cell line	GEO	GSE151225	GPL17021	32887696	txt
CRISPR	Kmt2d	Mus musculus	CXXC zinc finger factors	Zinc-coordinating DNA-binding domains	MA1L	Liver	Cell line	GEO	GSE151227	GPL17021	32887696	txt
CRISPR	Ssrp1	Mus musculus	High-mobility group (HMG) domain factors	Other all-alpha-helical DNA-binding domains	ES cells	Embryo	Cell line	GEO	GSE155863	GPL21273	32894293	txt
CRISPR	Satb2	Mus musculus	CUT	Helix-turn-helix	Colon organoid	Colon	Organoid	GEO	GSE167283	GPL24247	34582804	txt
CRISPR	Foxp3	Mus musculus	Fork head / winged helix factors	Helix-turn-helix domains	CD4+ Th0 cells	Spleens_ and_ lymphnodes	Primary cell	GEO	GSE167472	GPL19057	34341582	txt
CRISPR	Myc	Mus musculus	Basic helix-loop-helix factors (bHLH)	Basic domains	quiescent muscle stem cell	Skeletal_ muscle	Stem cell	GEO	GSE175899	GPL18480	34534448	txt
CRISPR	Gata4	Mus musculus	Other C4 zinc finger-type factors	Zinc-coordinating DNA-binding domains	primary cardiac fibroblasts	Heart	Primary cell	GEO	GSE175763	GPL19057	35293863	txt
CRISPR	Tbx20	Mus musculus	T-Box factors	Immunoglobulin fold	primary cardiac fibroblasts	Heart	Primary cell	GEO	GSE175763	GPL19057	35293863	txt

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Human Differential Expression of Genes:	txt	Mouse Differential Expression of Genes:	txt
Arabidopsis thaliana Differential Expression of Genes:	txt	Zea mays Differential Expression of Genes:	txt

Human Promoter:	txt	Mouse Promoter:	txt
Human Super-Enhancer:	txt	Mouse Super-Enhancer:	txt
Human Typical Enhancer:	txt	Mouse Typical Enhancer:	txt
Human T(co)F Motif:	txt	Mouse T(co)F Motif:	txt
Human T(co)F ChIP-seq:	txt	Mouse T(co)F ChIP-seq:	txt

Download (Epi)genetic Annotation File

Download T(co)F gmt File